Welcome to NGSPipes’ documentation!

NGSPipes is a framework to easily design and use pipelines, relying on state of the art cloud technologies to execute them without users need to configure, install and manage tools, servers and complex workflow management systems.

• NGSPipes overview
  • NGSPipes Team
• NGSPipes DSL
  • Primitives
  • Full NGSPipes DSL syntax
  • Examples
• NGSPipes repository
  • Tool names
  • Tool descriptors
  • Tool configurators
  • Defining your own tool repository
  • Tool Types
• NGSPipes Editor
  • Download NGSPipes Editor
  • Execute NGSPipes Editor
  • NGSPipes Editor Sections
  • Select the tools repository
  • Creating a new Pipeline
  • Generate the final pipeline version to execute
  • Loading an existing pipeline
  • Multiple loaded pipelines
  • Error Reporting
  • Multiple inputs
• Engines
  • Engine for workstation
  • Engine for cloud
• Running Examples
  • A pipeline used on epidemiological surveillance
  • A pipeline used on ChiP-Seq analysis
  • A pipeline using listing tools